PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007452
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 353aa    MW: 39381.9 Da    PI: 9.4127
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-14192PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.8e-144494155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Vun007452 44 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 94
               89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.10E-2644104No hitNo description
SuperFamilySSF541713.47E-1744104IPR016177DNA-binding domain
PfamPF008478.2E-104494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1645102IPR001471AP2/ERF domain
SMARTSM003804.2E-3245108IPR001471AP2/ERF domain
PROSITE profilePS5103215.46145102IPR001471AP2/ERF domain
PRINTSPR003672.6E-64657IPR001471AP2/ERF domain
PRINTSPR003672.6E-684104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
XVEADINFNI EDYEEDLKQM NNLTKEEFVH VLLRQSTGFP RGSSKYRGVT LHKCGRWEAR  60
MGQFLGKKYV YLGLFDTEIE AARAYDKAAI KCNGKEAVTN FDPSVYDNEL NSDSSGVAAD  120
HNLDLSLGNL SSRPGNGQIS GNHFPNSASD QHLPPASSWR NGGTNPKIHL VNILPKPCDR  180
SNMEAYARDW LGESETLRLL SQTHLQSPTT KEMHRYGPYR PPAEPQLSHN FARLHPPIFH  240
NMQVPSSSNN GGRIGSDLSL SMSDEQQWQA RHPHLLATAA ASSGFPPQIN PPKVGSRKMG  300
STPSIHDPSR LFIHECNFTN GVKEGMKKKG KPKLGTRWFL YNRSVKANQL TKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914306.10.0floral homeotic protein APETALA 2-like isoform X1
TrEMBLA0A4D6LQY70.0A0A4D6LQY7_VIGUN; AP2-like factor
STRINGXP_007156779.11e-180(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-78AP2 family protein