PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007540

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 342aa MW: 37532.5 Da PI: 7.6044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-31330	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Vun007540 104 WKCEKCSKKYAVQSDWKAHNKIC 126 58*****************8876 PP
2	zf-C2H2	11.6	0.00088	134	152	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Vun007540 134 DCGTIFSRKDSFVTHRAFC 152 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-4	92	125	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
XKPTRNTRSE CRSDCSVAKV ADGDEPVHMR SVQQGFPERP EPAAASARAQ SAVEAAAKIE 60 GRGGEEEGVR VSREELRHHD PCRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK 120 AHNKICGTRQ YKCDCGTIFS RKDSFVTHRA FCDAMVEQSG RLPAILSNLG NDILMNAQGP 180 RLMPQGLQLH GFHSEFGGPG SESYMGNFGD AAEHVEHKLR LPIWLDQTNL QLNHPLGLVP 240 GNSSVFSPGT TLPGNKQHVR DSVVTGTVDK LPIPEASFTS ASVSVPHHGL KLEQEENKGE 300 LSHSVSSLYP CHMESTRMSG NGYGNDNLPF DSSSFGWLDP NX

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

XKPTRNTRSE CRSDCSVAKV ADGDEPVHMR SVQQGFPERP EPAAASARAQ SAVEAAAKIE  60
GRGGEEEGVR VSREELRHHD PCRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK  120
AHNKICGTRQ YKCDCGTIFS RKDSFVTHRA FCDAMVEQSG RLPAILSNLG NDILMNAQGP  180
RLMPQGLQLH GFHSEFGGPG SESYMGNFGD AAEHVEHKLR LPIWLDQTNL QLNHPLGLVP  240
GNSSVFSPGT TLPGNKQHVR DSVVTGTVDK LPIPEASFTS ASVSVPHHGL KLEQEENKGE  300
LSHSVSSLYP CHMESTRMSG NGYGNDNLPF DSSSFGWLDP NX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	100	168	3	71	Zinc finger protein JACKDAW
5b3h_F	3e-35	100	168	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027925729.1	1e-178	zinc finger protein BALDIBIS-like isoform X1
Refseq	XP_027925731.1	1e-178	zinc finger protein BALDIBIS-like isoform X1
TrEMBL	A0A4D6N8T7	0.0	A0A4D6N8T7_VIGUN; Uncharacterized protein
STRING	XP_007150215.1	1e-151	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-40	C2H2-like zinc finger protein