PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007647

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 329aa MW: 36810.3 Da PI: 6.4353

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-25434	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365	1e-111	2	327	47	373
GRAS 47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 e+L ar s++++y+al+++e + +e l++++l++e++P+lkf++++aN aI ea +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg Vun007647 2 EGLVARKEASGKSIYHALRCREPE---GEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITG 98 899999999************9...9******************************************************************** PP GRAS 147 vgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 +++p s+ + l +g+rL+ + e++g+p+ef+ v +++ e+L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++ve Vun007647 99 IDDPVSKyarGGDGLDIVGKRLSLMSEKFGIPVEFHG-VPVFGPEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVE 197 99999999*********************.688899**************************************************** PP GRAS 244 qeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 qe+++n+++F++rf+e+l+yy a+f+s+ ++ lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF++ pls+++++ ++ ll+ Vun007647 198 QESNTNTTPFFNRFIETLDYYLAIFESIdASLLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFTQSPLSSYVNSVIRILLK 297 ************************66668**************************************************************9 PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ + y++ e++g+++lg dr+L+s+SaW Vun007647 298 CYS-EHYTLLEKDGAMLLGCPDRNLISASAW 327 888.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.86	1	309	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-109	2	327	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
VEGLVARKEA SGKSIYHALR CREPEGEELL SYMQLLFEIC PYLKFGYMAA NGAIAEACRN 60 EDRIHIIDFQ IAQGSQWMTL LQALAARPGG APHVRITGID DPVSKYARGG DGLDIVGKRL 120 SLMSEKFGIP VEFHGVPVFG PEVTREMLDI RPGEALAVNF PLQLHHTADE SVHVSNPRDG 180 LLRLVKSLSP KVTTLVEQES NTNTTPFFNR FIETLDYYLA IFESIDASLL PRDSKERINV 240 EQHCLARDIV NIIACEGKER VERHELLGKW KSRLTMAGFT QSPLSSYVNS VIRILLKCYS 300 EHYTLLEKDG AMLLGCPDRN LISASAWHC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-53	26	328	73	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027926890.1	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A4D6NBA1	0.0	A0A4D6NBA1_VIGUN; DELLA protein
STRING	XP_007149678.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-152	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]