PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007687

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

BBR-BPC

Protein Properties

Length: 325aa MW: 35944.7 Da PI: 9.7373

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-16589	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	372.8	6.1e-114	1	325	1	289
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla. 92 mdd g+re r+k+ +y++a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++e s+ Vun007687 1 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRESSIGs 100 9***999*9655544444432146**********************************************************998777 PP GAGA_bind 93 ...salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader. 186 ++p+g+q+++g+k+i++ qq +++ p+++d+++++re+++++alp aa+ ++e+ k+ +rak+pke+k+++++kk++k kkvkkes+d + Vun007687 101 gsmPSCPPGCQISRGVKHIHHPQQqVHHiPNMGDPSYNAREMHTTDALP---AAPITSEAGKS---RRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNk 194 77789*************9955669**************99...44555555444...4788999999999999999999***99555 PP GAGA_bind 187 ............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 ska++k +dl+ln+v++Dest+P+PvCsCtG+l+qCYkWGnGGWqSaCCttt+S+yPLP+++++r+aR++gr Vun007687 195 vmfgkahewkngqemvnggddlnkqlvvSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGR 294 9*********************************************************************************************** PP GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhW 289 KmS++af+klL++LaaeG+dlsnpvDLkdhW Vun007687 295 KMSGSAFNKLLSRLAAEGHDLSNPVDLKDHW 325 ***************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.6E-157	1	325	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.1E-97	1	325	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDDAGHRENG RHKADQYKSA QGQWLMQHQP SMKQIMAIMA ERDAAIQERN LAISEKKAAY 60 AERDMAFLQR DAAIAERNNA ILERDNAIAT LQYRESSIGS GSMPSCPPGC QISRGVKHIH 120 HPQQQVHHIP NMGDPSYNAR EMHTTDALPA APITSEAGKS RRAKRPKEPK STSPNKKTPK 180 AAKKVKKESE DLNKVMFGKA HEWKNGQEMV NGGDDLNKQL VVSKADWKGQ DLGLNQVAYD 240 ESTMPAPVCS CTGVLKQCYK WGNGGWQSAC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA 300 FNKLLSRLAA EGHDLSNPVD LKDHW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027902382.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_027902383.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_027902384.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_027902385.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_027902386.1	0.0	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-152	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A4D6NRY1	0.0	A0A4D6NRY1_VIGUN; GAGA-binding transcriptional activator
STRING	GLYMA04G02860.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-142	basic pentacysteine 6