PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007710
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 323aa    MW: 35776.1 Da    PI: 5.8101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-14418PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.63.9e-19240274135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vun007710 240 CSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 274
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.9E-761318IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-16234288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648234270IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-14236296No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14238272IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.54E-14239287No hitNo description
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
PfamPF003207.0E-17240274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MECMEAALKS NLRKEMMVQL SPETFMEELS VQNGTTCDDF FVDDLLDFSH VEEEPEQQQQ  60
KEQDLVCVSL QKENPCQEPY AFKPDYSSLP TTELSVLADD VADFEWLSHF VEDSFSEFSA  120
ALPTVTEGNP TATGHAAKEP KPEPENPVFT FKTPVQTKAR SKEAGTVFVS GHWVPLSFTE  180
SSSSSTTTTS SSSSSSPSSP LLIYTNFSRS LDHVCSEPKP NKPKKKHSSD SAGTLAPRRC  240
SHCGVQKTPQ WRTGPLGPKT LCNACGVRFK SGRLLPEYRP ACSPTFSSEL HSNHHRKVLE  300
MRQKKEMTTG IENGFTPAPV PKF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519944.11e-180GATA transcription factor 5
SwissprotQ9FH573e-68GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3VPF01e-179A0A1S3VPF0_VIGRR; GATA transcription factor
STRINGXP_007157952.11e-156(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-44GATA transcription factor 5