PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007716
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 323aa    MW: 35805.1 Da    PI: 8.1712
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.7e-4133110178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Vun007716  33 CCSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 110
                6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-332795IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.97531108IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3832113IPR004333Transcription factor, SBP-box
PfamPF031106.2E-3134107IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
GDVAKEPRDS KTVSSPSGSS KRSRLQNGSQ NMCCSVDGCT SDLSDCREYH RRHRVCEKHS  60
KTPVVLVGGK QQRFCQQCSR FHSLGEFDEV KRSCRKRLDG HNRRRRKPQP PSLFMAAEKF  120
MYNYKGPRIL HFGSPETYVN PIMRSMWSAT AKTGAESGYD PPLTVYRIDK HKQDKGHALW  180
QENDPIVGNA NEAMLGAPVC QPIHGTITPS TGGKSSRKHS SDAKPGSFDS GCALYLLSTL  240
QSQSPESSMV QSSITCPMQS PSGSVHFDTV NEYAYSETEK DNPSGQVLVL DNTTNLHCNG  300
MLQMGLDGLV ENDDPLTLPF LWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28341071184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190107KRSCRKRLDGHNRRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904587.10.0teosinte glume architecture 1-like
RefseqXP_027904595.10.0teosinte glume architecture 1-like
RefseqXP_027904604.10.0teosinte glume architecture 1-like
TrEMBLA0A4D6M7R50.0A0A4D6M7R5_VIGUN; Transcription factor
STRINGXP_007161706.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-42SBP family protein