PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007763

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 318aa MW: 35987.4 Da PI: 7.6247

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-34896	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.5	1.1e-20	170	220	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Vun007763 170 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 220 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.63E-32	169	228	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-32	169	229	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-38	170	234	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-22	170	230	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-14	170	220	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.223	170	228	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-13	171	182	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-13	210	230	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
XTAQSDPNQT KPHSSLAILQ TPYLQRQKRF NSSMANAAEV SALNRIKLHL LGELSPLATP 60 QNKQPSSQFN ETNNSPSQSS SSDSCLSFDH YLTELLEPEI QLPLFEFDSK PQIIDLDTPK 120 PLTSVHKKPQ SNRKPSLQIS LPKKTEWIQF GNPDPNPAVV LPENQPEKKH YRGVRQRPWG 180 KFAAEIRDPN KRGSRVWLGT FDTAIEAAKA YDRAAFRLRG SKAILNFPLE VSAVEETTDA 240 EGERKRRRQE EEEVEEVKPV VKKEKTTEQE VNCFREMPLT PSMWTGFWDS DVKEIFNVPP 300 LSPLSPLPAF GLSQLMVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-32	169	235	4	70	ATERF1
3gcc_A	5e-32	169	235	4	70	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	247	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027921955.1	0.0	ethylene-responsive transcription factor 5
Swissprot	O80341	2e-74	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A4D6KXY3	0.0	A0A4D6KXY3_VIGUN; EREBP-like factor
STRING	GLYMA05G05130.1	1e-130	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-56	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]