PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007778
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 316aa    MW: 34407.1 Da    PI: 6.1795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-11130PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.2e-093379647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
        Vun007778 33 QDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 79
                     69*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00182782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-113379IPR009057Homeodomain-like
PROSITE profilePS500906.5623380IPR017877Myb-like domain
PfamPF002496.5E-63379IPR001005SANT/Myb domain
CDDcd116607.50E-183379No hitNo description
SuperFamilySSF466891.17E-113481IPR009057Homeodomain-like
SMARTSM005262.3E-16142207IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.1E-16144219IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150427.006144212IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.46E-17144224IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-12146205IPR005818Linker histone H1/H5, domain H15
CDDcd000731.11E-11146224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
XELPESEEAV EKERQRENVS VNLNGESEAE VEQDEEDALI AGVEKHGPGK WKNILKDPQF  60
APFLTSRSNI DLKDKWRNLS VSNGSQGSKD KPRAPKLKAL PAPPSATTSA ATTATPQNAA  120
SAPQNAPSDA AVPDSSLNDQ DVKNPPRYNA MVFEALSALK DNNGSDLNAI VSFIEQKHQV  180
PQNFRRALST RLRRLVSQGK LEKVQNCYKI KKDAPSGTKS PSPKPKDVRP APSQPAPQPQ  240
WHSSVSVFTA SNETIKDAAD TAAYRIADAE SKSYLAAEAV KEAEKISLLV EHSDSMLQLA  300
KDIYEQCSRG EIILLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027906136.10.0telomere repeat-binding factor 4-like isoform X2
TrEMBLA0A1S3VC730.0A0A1S3VC73_VIGRR; telomere repeat-binding factor 4 isoform X1
STRINGXP_007135517.11e-172(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-58MYB_related family protein