PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007894

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 305aa MW: 34628.3 Da PI: 9.471

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-19954	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.6e-11	19	53	3	37
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvke 37 +k +rr+++NReAAr+sR+RKka++++Le + Vun007894 19 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLK 53 7899*************************975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-8	13	63	No hit	No description
SMART	SM00338	9.2E-7	17	77	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	19	63	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.6E-8	19	55	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.69E-7	21	63	No hit	No description
PROSITE pattern	PS00036	0	24	39	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-32	107	181	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
XHGILGAPNK YDQEANKPTD KIQRRLAQNR EAARKSRLRK KAYVQQLESS RLKLMQLEQE 60 LERARQQGMY IGGGLDSNHL GFAGSVNSGI TTFETEYGHW VNEQNRQITE LRSALNAHIG 120 DIELRILVDG MMNHYAEIFR MKSAAAKADV FYVMSGMWKT TAERFFLWIG GFRPSELLKV 180 LGPLIEPLTE QQRLDIYNLG QSCQQAEDAL SQGMDKLRQT LADSVAAGQF MEGTYIPQMT 240 SAMEKLEALV SFVNQADHLR QGTLQQMSRI LTIRQAARCL LALGEYFQRL RALSSLWSNR 300 PREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027924106.1	0.0	transcription factor TGA4-like
Refseq	XP_027924116.1	0.0	transcription factor TGA4-like
Swissprot	Q39162	1e-165	TGA4_ARATH; Transcription factor TGA4
TrEMBL	Q93XA2	0.0	Q93XA2_PHAVU; TGA-type basic leucine zipper protein TGA1.1
STRING	XP_007163615.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-159	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]