PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008012
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 294aa    MW: 32087.6 Da    PI: 6.245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-8375PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16144180135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+t+  Tp +Rrgp g++tLCnaCGl+++ kg+
  Vun008012 144 CHHCGVTEnnTPAMRRGPAGPRTLCNACGLMWANKGT 180
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.5E-7540IPR010399Tify domain
PROSITE profilePS5132012.868540IPR010399Tify domain
PfamPF062009.8E-10839IPR010399Tify domain
PfamPF062035.4E-1573114IPR010402CCT domain
PROSITE profilePS5101712.71973115IPR010402CCT domain
PROSITE profilePS501148.827138197IPR000679Zinc finger, GATA-type
SMARTSM004019.7E-11138191IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12139188No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15142185IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.55E-16143187No hitNo description
PROSITE patternPS003440144171IPR000679Zinc finger, GATA-type
PfamPF003202.7E-14144180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
PLPAMPSRTS ELTLSFEGEV YVFPAVTPQK VQAVLLLLGG RDVHAGVPAV ELPFDQSNRG  60
MGDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYSVRKE VAQRMHRKNG QFASLKESPG  120
SSNWDSVRSS AQDGTSHSES VRRCHHCGVT ENNTPAMRRG PAGPRTLCNA CGLMWANKGT  180
LRDLSKGGRN LSVEQSDLDI PIDVKPTSVI EGELPGIHDE QGSSEDPSKS NTGDGSSGHA  240
VNPSDEELPE TADHFTNAPP LGLGHSSRND TEQEPLVELS NPSDTDIDIP ENFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904507.10.0GATA transcription factor 24-like isoform X2
SwissprotQ8GXL73e-66GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A4D6NSL90.0A0A4D6NSL9_VIGUN; Pseudo-response regulator 1
STRINGXP_007136307.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-70ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]