PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008133
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 284aa    MW: 30463.7 Da    PI: 9.0033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-16474PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11167214455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Vun008133 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.98E-11161218No hitNo description
PROSITE profilePS5088815.828163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18163232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
XVIPLVNVKL SLRFGFSFMD PGGMMNEGSF ANNGSGNTAP YSLAEIWQFP QAINGGGGLG  60
LRSPQFGHGP GQFGDFPPGP NNGLGTSNTR KRRDSEDDSA KAVSTSNAVN EGDGKRVKAT  120
ANGDGNGKGE GEVSSGKPAE QSAKPPSEAP KQDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR LNSGIEAFPP  240
KDFGQHAFDP AGMPFGSQAP REYSRGSSPE WLHMQVGGGF ERTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917515.10.0transcription factor BHLH089
SwissprotQ84T081e-79BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A1S3UN420.0A0A1S3UN42_VIGRR; transcription factor BHLH089
TrEMBLA0A4D6L2H60.0A0A4D6L2H6_VIGUN; Phytochrome-interacting factor 3
STRINGXP_007153872.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-97BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]