PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun008260

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 277aa MW: 30529.9 Da PI: 7.0332

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-18711	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.3	1.9e-17	189	225	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Vun008260 189 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGT 225 *********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	6.1E-13	53	88	IPR010399	Tify domain
PROSITE profile	PS51320	14.578	53	88	IPR010399	Tify domain
Pfam	PF06200	2.9E-13	57	87	IPR010399	Tify domain
Pfam	PF06203	1.7E-15	121	163	IPR010402	CCT domain
PROSITE profile	PS51017	12.362	121	163	IPR010402	CCT domain
SuperFamily	SSF57716	9.98E-13	183	236	No hit	No description
PROSITE profile	PS50114	10.515	183	232	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.9E-15	183	236	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.9E-16	187	230	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.24E-16	188	233	No hit	No description
Pfam	PF00320	3.4E-15	189	225	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	189	216	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MYDPLNQIVP AEDNDGDASD QHIHYSSHTI EDVGAVVEHV SADSLYVPPP EISIQDSSQL 60 TLSFRGQVYV FDAVTPDKVQ AVLLLLGGSE LTSGSQCAEE LSPQNHAGVA EFPARCSLPQ 120 RVASLNRFRQ KRKERCFDKK VRYSVRQEVA LRMHRNKGQF TSSKKQDGAN SWGSDQESGQ 180 EAVQSETSCT HCGTSSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDLS KRNHELSIVP 240 LEQVVDVGNK NGLNCRSNIP AQHENHVNDN KALVSDR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027942125.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	3e-89	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A4D6NSJ6	0.0	A0A4D6NSJ6_VIGUN; Pseudo-response regulator 1
STRING	XP_007136308.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-83	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]