PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008316
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 274aa    MW: 29112.2 Da    PI: 10.2998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-14003PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-0981106227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt++C+ f     Ck+Gd+C+FaHg+
  Vun008316  81 KTRICNKFNTAEGCKFGDKCHFAHGE 106
                8***********************96 PP
2zf-CCCH35.61.6e-11242266126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +f++ G C +G+rC+FaHg
  Vun008316 242 FKTKLCENFSK-GSCTFGERCHFAHG 266
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-878110IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-479106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1379109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6179107IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-681106IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-15138220IPR004088K Homology domain, type 1
SMARTSM003222.2E-12147217IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.3E-16148216IPR004088K Homology domain, type 1
PROSITE profilePS5008414.948148212IPR004088K Homology domain, type 1
PfamPF000137.6E-12150213IPR004088K Homology domain, type 1
CDDcd001053.62E-15150213No hitNo description
Gene3DG3DSA:4.10.1000.105.5E-15239272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8240271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23241268IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6241267IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9242266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDTRKRGRLE LGFNSNGGFK KSKQALLVVR LVRVATSLHY VPGGYNAVAH IMNLTPAAPP  60
ASRNVAALPP VPNGSAPAAV KTRICNKFNT AEGCKFGDKC HFAHGEWELG KQIAPSFDDH  120
RALGPTAAGR FGGRMEPSPG PATSFGSHAT AKISVEASLA GAIIGKGGVN SKQICRQTGA  180
KLSIREHESD PNIRNIELEG NFEQIKEASN MVKDLLLTLQ MSASKANPGV PGAPTREHGS  240
NFKTKLCENF SKGSCTFGER CHFAHGAAEL RKSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927998.10.0zinc finger CCCH domain-containing protein 14-like isoform X2
RefseqXP_027940730.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-80C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D6M9V40.0A0A4D6M9V4_VIGUN; Far upstream element-binding protein
STRINGXP_007162316.11e-180(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-68C3H family protein