PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008334
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 273aa    MW: 29506.5 Da    PI: 8.2894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-12683PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.3e-131337327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C+f+++tG Ck+G++CkF+H++
  Vun008334 13 EPPCSFYMKTGKCKFGASCKFHHPK 37
               79*********************96 PP
2zf-CCCH41.42.4e-1390113326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C+f+++tG CkyG++C+++H+
  Vun008334  90 EVDCPFYMKTGSCKYGATCRYNHP 113
                689********************9 PP
3zf-CCCH39.87.3e-13176199326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                + +C+f+++tG Ck+G+rCk++H+
  Vun008334 176 QIECDFYMKTGDCKFGERCKYHHP 199
                568********************8 PP
4zf-CCCH41.71.9e-13227250427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+++++tGtCk+G++CkF H+p
  Vun008334 227 VICPYYLKTGTCKFGATCKFDHPP 250
                68********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.8E-71037IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5211038IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-111337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-61438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-61536IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.67187115IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-1190113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-593112IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094173201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6175201IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10177199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5179199IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286223251IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11227250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6227251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6228248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
DDVTSGLPDR PSEPPCSFYM KTGKCKFGAS CKFHHPKDIQ IQSSDQLSHT AAQTEINSMI  60
GGALGDTQPI KSLISPSFQN SKGLPVRLGE VDCPFYMKTG SCKYGATCRY NHPDRNAINP  120
PIAGLGASIF PSSATSLNIG LLSPAMSVYQ GFDPRLSNPM SQVGIAETIY PQRPGQIECD  180
FYMKTGDCKF GERCKYHHPI DRSAPSLSKQ ASVKLTPAGL PRREGAVICP YYLKTGTCKF  240
GATCKFDHPP PGRKLWEMAK SQGTSADGGE AED
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027910843.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-100C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A4D6LBY60.0A0A4D6LBY6_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-103floral homeotic protein (HUA1)