PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008515
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 265aa    MW: 30507.9 Da    PI: 10.3386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-3179PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05150175123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kC    C +sF++k +L  H r+ +
  Vun008515 150 HKCDldGCRMSFKTKAELLLHKRNlC 175
                799999****************9876 PP
2zf-C2H211.10.0012175197323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                Cp   Cgk Fs++ +   H+r+H
  Vun008515 175 CPheGCGKKFSSHKYALLHQRVH 197
                88889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035511150172IPR015880Zinc finger, C2H2-like
SMARTSM003550.67173197IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05173202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6175210No hitNo description
PROSITE patternPS000280175197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-6175201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.2E-11202227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016203227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03203232IPR007087Zinc finger, C2H2
PROSITE patternPS000280205227IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-11213263No hitNo description
Gene3DG3DSA:3.30.160.601.4E-11228256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.66233259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263233264IPR007087Zinc finger, C2H2
PROSITE patternPS000280235259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKNQSVNRID EELFSGTDTS IKDSSLSVQE CSKIENEIYV TEKINENKAD LSHYKRGLES  60
CELATEVPRL NSGKKKMRKV ERTRNQSNSD NFIRSPCEGL RPRAGKIAAE KSRVEINPVD  120
KENQVAKRAR RSSEVLVPRK NKKDGVKKSH KCDLDGCRMS FKTKAELLLH KRNLCPHEGC  180
GKKFSSHKYA LLHQRVHDDE RPLKCPWKGC SMSFKWAWAR TEHIRVHTGE KPYHCKVEGC  240
GLSFRFVSDF SRHRRKTGHH VKPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-5714926222135Lysine-specific demethylase REF6
6a58_A4e-5714926222135Lysine-specific demethylase REF6
6a59_A4e-5714926222135Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934445.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA08e-64ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A4D6N6070.0A0A4D6N607_VIGUN; Histone demethylase JARID1
STRINGXP_007143729.11e-152(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-66C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]