PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008834
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 252aa    MW: 27807 Da    PI: 8.7824
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-31955PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-092647426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                +C ++++ G C yG+rC++ H+
  Vun008834 26 NICTYYQK-GVCAYGSRCRYKHV 47
               68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.352120IPR000571Zinc finger, CCCH-type
SMARTSM0035694219IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-42448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-52446IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-62547IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-52746IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8452749IPR000571Zinc finger, CCCH-type
SMARTSM0035628119144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.211119145IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.03E-12177251No hitNo description
Gene3DG3DSA:3.30.40.102.7E-10184251IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00965187251No hitNo description
PROSITE profilePS5008911.914188251IPR001841Zinc finger, RING-type
SMARTSM001848.5E-6188250IPR001841Zinc finger, RING-type
PfamPF000973.6E-7188250IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180212221IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
XYARGACLKG DQCDFVHERR DGVNYNICTY YQKGVCAYGS RCRYKHVKAY EASSSSSSNG  60
RHPPVSDSVV NHTTKGASSW VPKASKSSSL DKCARSSQHK IVVCSGNDVG ESSSSGTTPS  120
GLLFCSFAAA NCPRGNKCSR VHGNRCLYCR KFFAYILLTE RKEKIILATC EKKEKYFQAL  180
NDSQEVECNV CLERVLSKPR PSDCKFGLLP ECDHAFCLSC IRNWRNSAPT SGMDMSNNGT  240
ANTVRTCPVC RX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027938898.11e-158E3 ubiquitin-protein ligase makorin-like
TrEMBLA0A4D6M2N11e-157A0A4D6M2N1_VIGUN; Cleavage and polyadenylation specificity factor subunit 4
STRINGGLYMA15G42820.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.26e-55C3H family protein