PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun008880

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 28566.1 Da PI: 7.5595

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-29034	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	54	100	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 eql++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Vun008880 54 EQLKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 100 8*********************************************9 PP
2	HD-ZIP_I/II	122.1	2.7e-39	54	136	9	91
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 eq+k+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L++++++L++e+ Vun008880 54 EQLKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEI 136 9*******************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-19	32	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.099	42	102	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	44	106	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	54	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-20	54	109	IPR009057	Homeodomain-like
CDD	cd00086	2.07E-14	54	103	No hit	No description
PRINTS	PR00031	9.1E-6	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	82	98	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.2E-16	102	142	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MAFFPANFML QTPHQDDHQP PPSLNSIITS CAPQEYHGGA SFLGKRSMSF SGIEQLKTLE 60 KSFELGNKLE PERKMQLARA LGLQPRQIAI WFQNRRARWK TKQLEKDYDL LKRQYEAIKA 120 DNDALQAQNQ KLQTEILALK SREPTESINL NKETEGSSSN RSENSSEIKL DISRTPAIDS 180 PLSTQQNSRN LFPSSTRPTG VAQLFQTTSR PELQCQKIDH MVKEESLSNM FCGIDDQSGL 240 WPWLEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	102	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027920740.1	1e-171	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	5e-95	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A4D6L1T2	1e-170	A0A4D6L1T2_VIGUN; Homeobox-leucine zipper protein
STRING	XP_007153821.1	1e-169	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-86	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]