PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008903
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 249aa    MW: 26776.9 Da    PI: 7.8689
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-11189PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.52e-3050104358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  ++rY+eClkNhA+ +Ggha+DGCgEf+++ g+eg+ +alkCaAC CHRnFHR+e++
    Vun008903  50 RARYRECLKNHAVGIGGHALDGCGEFLAA-GTEGSLDALKCAACSCHRNFHRKESD 104
                  689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2149102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.6E-2851103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-2852102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.96153102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.6E-32173248IPR009057Homeodomain-like
SuperFamilySSF466893.81E-18174247IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25186242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEFEDQEDQE EEQCMGAAAY DPARMKVPVG PEAVMAAQPV RSSTNGGAGR ARYRECLKNH  60
AVGIGGHALD GCGEFLAAGT EGSLDALKCA ACSCHRNFHR KESDGAGASV GGGDPYLVSH  120
HHLHHPPPPQ FAAYYRTPTG YLQVGGQARV AGTLALPSTS GGGGTQSTRE DQEDVSNPSA  180
GGTGSKKRFR TKFTQEQKDK MLELAEKLGW RIQKHDEGVV QAFCNETGVK RHVLKVWMHN  240
NKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251852441675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913173.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-75ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A4D6LP390.0A0A4D6LP39_VIGUN; Uncharacterized protein
STRINGXP_007158386.11e-144(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-66homeobox protein 22