PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008944
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 247aa    MW: 28055.3 Da    PI: 9.3573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-14589PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.4e-19113204499
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l +++e  l v+vfr 
  Vun008944 113 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRV 204
                7889*******************876743...59999999********665555..66************************9999999***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-25102203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-25103204IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-23108203No hitNo description
PROSITE profilePS5086314.099110205IPR003340B3 DNA binding domain
SMARTSM010193.7E-19110205IPR003340B3 DNA binding domain
PfamPF023622.9E-17113203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XSSYSSKSAN SLGSQSTRDI GVQFNAVEFK RSTDELKLRY SNEEALNKTA KKERKSESQG  60
EEPSGENEEE AEMRYRFYES ASARKRTVTA EERERAINAS KAFEPTNPFC RVVLRPSYLY  120
RGCIMYLPSC FAEKNLNGVS GFIKLQLSNG RQWSVRCLYR GGRAKLSQGW FEFTVENNLG  180
EGDVCVFELL RTKEVVLQVT VFRVTEDAGL LNSPPSVQQL SQNMSHTKLL NPHLQHRVSS  240
TVKLIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-757620615144B3 domain-containing transcription factor VRN1
4i1k_B5e-757620615144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913888.11e-180B3 domain-containing transcription factor VRN1-like isoform X3
SwissprotQ8L3W12e-76VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A4D6LLI71e-177A0A4D6LLI7_VIGUN; Uncharacterized protein
STRINGXP_007153153.11e-159(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-76related to vernalization1 1
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]