PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008956
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 247aa    MW: 26694.2 Da    PI: 4.5251
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-8374PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16170206135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+t+  Tp +Rrgp g++tLCnaCGl+++ kg+
  Vun008956 170 CHHCGVTEnnTPAMRRGPAGPRTLCNACGLMWANKGT 206
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.8686297IPR010399Tify domain
SMARTSM009798.5E-76297IPR010399Tify domain
PfamPF062007.6E-106596IPR010399Tify domain
PROSITE profilePS501148.827164223IPR000679Zinc finger, GATA-type
SMARTSM004019.7E-11164217IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-12165214No hitNo description
Gene3DG3DSA:3.30.50.104.0E-15168211IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.51E-17169213No hitNo description
PfamPF003202.1E-14170206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASVNPQPLQ YQDPAIPVDD DDDDDSDGAD DDAMDELEDA HVSSVNVVAN AASANHEPLP  60
AMPSRTSELT LSFEGEVYVF PAVTPQKVQA VLLLLGGRDV HAGVPAVELP FDQSNRGMGD  120
TPKRSNLSRR IASLVRFREK RKESPGSSNW DSVRSSAQDG TSHSESVRRC HHCGVTENNT  180
PAMRRGPAGP RTLCNACGLM WANKGTLRDL SKGGRNLSVE QSDLDIPIDV KPTSVIEEEL  240
PGIHDEX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904507.11e-157GATA transcription factor 24-like isoform X2
SwissprotQ8GXL73e-49GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3U8W41e-146A0A1S3U8W4_VIGRR; GATA transcription factor 24 isoform X1
STRINGGLYMA04G10340.11e-141(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-49ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]