PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008994
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 246aa    MW: 27474.2 Da    PI: 10.437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45863840PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19164210251
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka+++a++
  Vun008994 164 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAL 210
                8********.**********96655..*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-24163210No hitNo description
Gene3DG3DSA:3.30.730.104.8E-26163211IPR001471AP2/ERF domain
SMARTSM003801.3E-23164228IPR001471AP2/ERF domain
PROSITE profilePS5103220.126164222IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18164212IPR016177DNA-binding domain
PfamPF008471.9E-13164211IPR001471AP2/ERF domain
PRINTSPR003671.3E-10165176IPR001471AP2/ERF domain
PRINTSPR003671.3E-10188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
XNQTKPHSSL AILQTPYLQR QKRFNSSMAN AAEVSALNRI KLHLLGELSP LATPQNKQPS  60
SQFNETNNSP SQSSSSDSCL SFDHYLTELL EPEIQLPLFE FDSKPQIIDL DTPKPLTSVH  120
KKPQSNRKPS LQISLPKKTE WIQFGNPDPN PAVVLPENQP EKKHYRGVRQ RPWGKFAAEI  180
RDPNKRGSRV WLGTFDTAIE AAKAYDRAAL QAPRLXGHPQ LPARSKRGGG DHRRQGREEA  240
AAPGGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21163211149ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21163228469ATERF1
3gcc_A5e-21163228469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921955.11e-131ethylene-responsive transcription factor 5
SwissprotO803414e-44EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A4D6KXY31e-129A0A4D6KXY3_VIGUN; EREBP-like factor
STRINGGLYMA05G05130.15e-89(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-46ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]