PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009285

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 235aa MW: 26246.8 Da PI: 7.8391

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-29741	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.6e-32	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl Vun009285 20 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-30	18	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.7E-16	19	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-22	20	75	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-8	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-23	118	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDLQNVQNQT MRLVLSTDAK PRLKWTPELH QRFTEAINQL GGAEKATPKS LMRVMGIPGL 60 TLYHLKSHLQ KYRLGKNSPL ETCSDNKQQG FSEIKSSDGH CSREICTGTQ NQMNESLKIA 120 EALQMQMEVQ RKLYEQIEVQ RHLQLRIEAQ GKYLQSVLSK AHETLARYDS STTGIEVAKS 180 ELSQLVSIIN NACPTSPISE LTETRGLSLN CGEMKQDRGT MCSLESSLTS SESSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027917058.1	1e-171	myb family transcription factor PHL8-like
Swissprot	F4I274	8e-76	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0S3R1K2	1e-151	A0A0S3R1K2_PHAAN; Uncharacterized protein
STRING	XP_007158649.1	1e-150	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	7e-78	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]