PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009287

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

DBB

Protein Properties

Length: 235aa MW: 25363.3 Da PI: 4.9083

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-31312	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	6e-07	20	60	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + lfC+ ++ +lC C +++H H+ Vun009287 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60 78****99******************95545666665 PP
2	zf-B_box	27.1	8.5e-09	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C + +H+ H++vp+ Vun009287 62 VWMCEVCEQAPAAVTCKADAAALCITCDSDIHSAnplarrHDRVPV 107 689*****************************66899999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.4E-10	17	64	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.997	17	64	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.6E-5	19	61	IPR000315	B-box-type zinc finger
CDD	cd00021	2.13E-6	21	64	No hit	No description
PROSITE profile	PS50119	10.694	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	61	107	IPR000315	B-box-type zinc finger
CDD	cd00021	2.48E-7	63	107	No hit	No description
SMART	SM00336	3.8E-8	65	107	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGIERGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE 60 RVWMCEVCEQ APAAVTCKAD AAALCITCDS DIHSANPLAR RHDRVPVEPF FDSADSIVKA 120 SAAASFGFIV PSDDATAASD AFAPDDTDAA AWLIPNPNFG SKLMDAPDIK SKEIFYSEMD 180 PFLDFDYSNS FHNSAGNDSV VPVQTKPSLA PSLINNHHQS ESCFDIDFCR TKLSX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027920708.1	1e-172	zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	3e-74	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A4D6L096	1e-171	A0A4D6L096_VIGUN; Zinc finger protein CONSTANS
STRING	XP_007154800.1	1e-159	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-74	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]