PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun009383
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 232aa    MW: 25405 Da    PI: 8.5085
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-33720PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-302103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++Cvl+p +     +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++
  Vun009383   2 SCNGCRVLRKGCSESCVLRPSLqwietAEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETV 101
                6*********************9999777889****************************************************************9988 PP

     DUF260  96 ll 97 
                l+
  Vun009383 102 LR 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7971107IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR PSLQWIETAE AQGHATVFVA KFFGRADLMS FISNVPENQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELMGLASPA  120
AAADETSEVA CSDIWRIRDP NPTCGFTNTR SHNRASSASK RKRLEEPAKL QAAPNLDLRL  180
TPIFLQKKVE NRRPVSPSMT SEESGTTTAC LESKFGDQWG HSGDRKVLNL FI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027916306.11e-172LOB domain-containing protein 37-like
SwissprotQ9SZE83e-84LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A4D6KXR31e-171A0A4D6KXR3_VIGUN; Carbamoyl-phosphate synthase large subunit
STRINGXP_007155842.11e-165(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-86LOB domain-containing protein 39