PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun009526
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26182.9 Da    PI: 8.2886
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-28143PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.3e-301363151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ yss
  Vun009526 13 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSS 63
               69***********************************************96 PP
2K-box68.12.9e-2387175997
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                +e + ++ l+qel  L+ + e+Lqr+qR+l+Ge+Le+L++keL++Le+qL+k l + R++ ++ l+++i+el  k ++l+++n+ L++k
  Vun009526  87 AELQSQQCLYQELLVLRVKHESLQRTQRNLMGEELEPLNMKELHSLEKQLDKTLAQARKHLSQKLVSKIDELHGKVRNLEQINRHLESK 175
                5667889*******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.385565IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-39564IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-31677IPR002100Transcription factor, MADS-box
CDDcd002651.60E-39676No hitNo description
PROSITE patternPS003500761IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30727IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251461IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302742IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-304263IPR002100Transcription factor, MADS-box
PfamPF014868.3E-1990175IPR002487Transcription factor, K-box
PROSITE profilePS5129713.61792186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
EERSMGRGKV VLERIQNKIN RQVTFSKRRN GLLKKAFELS VLCDAEIALI IFSSRGKLFQ  60
YSSTDINRII EKYRQCCFDM SQIGDEAELQ SQQCLYQELL VLRVKHESLQ RTQRNLMGEE  120
LEPLNMKELH SLEKQLDKTL AQARKHLSQK LVSKIDELHG KVRNLEQINR HLESKDIAKC  180
TQICEDSTNQ FESGTASSLP LQHEQITSKG KEVETSALTR ITNCSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-25573169MEF2C
5f28_B5e-25573169MEF2C
5f28_C5e-25573169MEF2C
5f28_D5e-25573169MEF2C
6byy_A5e-25573169MEF2 CHIMERA
6byy_B5e-25573169MEF2 CHIMERA
6byy_C5e-25573169MEF2 CHIMERA
6byy_D5e-25573169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934986.11e-151MADS-box transcription factor 17-like isoform X1
SwissprotQ7XUN22e-61MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A1S3V4F31e-132A0A1S3V4F3_VIGRR; MADS-box transcription factor 17 isoform X1
STRINGGLYMA10G38580.11e-125(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.12e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]