PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009535

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 227aa MW: 25512.2 Da PI: 6.2545

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45812119	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61.7	1.3e-19	175	217	13	55
E--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 13 KevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 K vk+s+fprsYYrCts +C+vkk+vers +dp+vv++tYe + Vun009535 175 KAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEAN 217 99**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03106	1.0E-12	174	216	IPR003657	WRKY domain
SMART	SM00774	1.9E-14	175	221	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.1E-16	175	217	IPR003657	WRKY domain
PROSITE profile	PS50811	17.855	175	223	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-14	175	216	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEKKEMVVKT EDAVGSSSFP CYNSNVYPFS NAFDFSEVEK SSLGFMELLG VQDYSPLLEL 60 PQLSTVSAPH HSTVKAPSDN GKECSEVLNH QPATPNSSSI SSASSDAVND EQNKTLDQVE 120 EDDDEEEEGQ HKTKKQLKPK KTNQKRQREP RFAVHDEKRG RSSGRWVQME EVRSKAVKNS 180 PFPRSYYRCT SVSCNVKKRV ERSFTDPSVV VTTYEANTHI QAQLCLA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027935075.1	1e-112	WRKY transcription factor 23-like
Swissprot	O22900	8e-35	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S3V6F6	1e-107	A0A1S3V6F6_VIGRR; WRKY transcription factor
STRING	GLYMA10G01450.2	1e-103	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-27	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]