PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009579

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 225aa MW: 25963 Da PI: 9.3685

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-2326	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.6e-35	28	119	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sws+ + sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++i+ Vun009579 28 FLLKTYDMVDDPSTNDIVSWSSCNASFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFANDEFVKDQKHLLKNIH 115 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Vun009579 116 RRKP 119 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.59E-36	24	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.1E-60	24	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.7E-38	24	117	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.0E-19	28	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.7E-31	28	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-19	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
XKDPFQSQMD GAPPSAAAAA AAGGPAPFLL KTYDMVDDPS TNDIVSWSSC NASFVVWNPP 60 EFARLLLPTY FKHNNFSSFI RQLNTYGFRK IHPERWEFAN DEFVKDQKHL LKNIHRRKPI 120 HSHSHPPGSI VDPERAAFEE EIDKLSREKT SLESNIHNFK QHQSTAKLQL EDFLQRLDAT 180 EKRQKQLLNF FEKALQNPSF VEHLSRKIES MDLSAYNKKR RLPQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	5	117	8	129	Heat shock factor protein 1
5d5v_B	1e-22	5	117	8	129	Heat shock factor protein 1
5d5v_D	1e-22	5	117	8	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027933565.1	1e-142	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	2e-97	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A4D6KPD3	1e-157	A0A4D6KPD3_VIGUN; Heat shock transcription factor 4
STRING	GLYMA05G28460.1	1e-138	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-98	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]