PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun009681
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 221aa    MW: 23441.5 Da    PI: 8.495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-31807PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.9e-06183211331
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                 +h+ +Er RR++i +++  L++l+P +s
  Vun009681 183 NSHSLAERVRREKISERMKFLQDLVPGCS 211
                58************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-8178217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-5178214No hitNo description
PROSITE profilePS5088811.28180221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-8181217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XQEIAIAGHG LKSVNEGQSQ GGDMNVVEAT KDLSPSVEHL ASKGSPLKSD KRSEGHIMSQ  60
DDGKLSLVRP ANESDRAESS DDGGGQDDSP LLEGASGEPS IKGLNSKKRK RSGLDADNGK  120
GNGATEIPND AAQVNSENQQ KVDHQPIPAT KSSGKNAKLG SQASDPPKEE YIHVRARRGQ  180
ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVNA R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913675.11e-147transcription factor bHLH49
RefseqXP_027913676.11e-147transcription factor bHLH49
RefseqXP_027913677.11e-147transcription factor bHLH49
RefseqXP_027913678.11e-147transcription factor bHLH49
RefseqXP_027913679.11e-147transcription factor bHLH49
RefseqXP_027913680.11e-147transcription factor bHLH49
RefseqXP_027913681.11e-147transcription factor bHLH49
RefseqXP_027913683.11e-147transcription factor bHLH49
SwissprotQ9CAA93e-31BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A4D6LNZ31e-147A0A4D6LNZ3_VIGUN; Phytochrome-interacting factor 3
STRINGGLYMA01G09400.31e-121(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]