PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009946

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 212aa MW: 23576.4 Da PI: 8.417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45922749	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	46	69	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs +Lk+H + + Vun009946 46 YTCSRCNtKKFSVMADLKTHEKHC 69 9*******************9876 PP
2	zf-C2H2	11.4	0.00099	78	93	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L Hi Vun009946 78 CGTTFSRKDKLFGHIA 93 **************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
NRSLSRGIPA PMPAAXRNKD HKKFQPLKTI LCVKNHYKRT HCDKSYTCSR CNTKKFSVMA 60 DLKTHEKHCG KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDDIKGV AEPPDPQNRE 120 CSNKVGSVNF CFGSKPSSEN VVQNMMDMKG NIDDPMNYFS SLNFEGCNFG AFSELPQTPF 180 EDSEGSFSFL MSGSFNYAPK FGGGESSSDN LL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027936675.1	1e-142	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Refseq	XP_027936676.1	1e-142	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Refseq	XP_027936678.1	1e-142	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q943I6	6e-72	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A4D6N3Y0	1e-141	A0A4D6N3Y0_VIGUN; Uncharacterized protein
STRING	XP_007143658.1	1e-134	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-75	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]