PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun010252
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 23304.6 Da    PI: 8.6249
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-28387PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92.1e-26756251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               +i+n +nrqvtf+kRrng+ KK  ELS+LCdaev vi+fs tgklyeys+
  Vun010252  7 KIDNLTNRQVTFCKRRNGLVKKTRELSILCDAEVGVIVFSCTGKLYEYSN 56
               79**********************************************95 PP
2K-box83.93.5e-28811671298
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  + +q+e+a L+++++ Lq+++R+l+Ge+L++L++++L++Le++L+++l++i  kK+++l+++i+elqkk   ++++n++L+kk+
  Vun010252  81 SSVKFWQREAASLREQLQHLQESNRQLMGEELSDLNMNQLKELENKLQTGLSNIQIKKDQMLKDEIKELQKKGMVIHQQNEELHKKI 167
                56799********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-30157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.291158IPR002100Transcription factor, MADS-box
CDDcd002656.57E-39275No hitNo description
SuperFamilySSF554551.44E-28280IPR002100Transcription factor, MADS-box
PfamPF003194.5E-24754IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-152035IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-153556IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2381167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.97483173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
XKIPIQKIDN LTNRQVTFCK RRNGLVKKTR ELSILCDAEV GVIVFSCTGK LYEYSNTSMK  60
SIIDRFNSHN ENLGWLMDPT SSVKFWQREA ASLREQLQHL QESNRQLMGE ELSDLNMNQL  120
KELENKLQTG LSNIQIKKDQ MLKDEIKELQ KKGMVIHQQN EELHKKINLI HENNVELRKV  180
IEARDMEKEK ATCYQQWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-17271574MEF2C
5f28_B9e-17271574MEF2C
5f28_C9e-17271574MEF2C
5f28_D9e-17271574MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921619.11e-142MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP493e-72MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A4D6L6V11e-121A0A4D6L6V1_VIGUN; MADS-box transcription factor
STRINGXP_008237086.15e-76(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-69AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]