PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun010260
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 198aa    MW: 22609.6 Da    PI: 6.6803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45823155PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-124894455
               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Vun010260 48 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 94
               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2594493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-124798No hitNo description
SuperFamilySSF474593.53E-1847113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-104894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1848113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.09E-5128195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
XYPGVRFLKV ALDECVKFHD ARTAKFFWEV LVEVGRVKPA NGREEPLNHV EAERQRREKL  60
NQRFYALRAV VPNISKMDKA SLLGDAITFI TDLQMKIKVL EAEKNMINNK DQRLSLPDMD  120
FQEREDDTVV TVRCPLDTHP VSDVVKTFRE HQIVAQDTNV STTDDKIIHT FSIRTEGGEA  180
AAIQLKEKLE AALSKNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-3142116276Transcription factor MYC2
5gnj_B3e-3142116276Transcription factor MYC2
5gnj_E3e-3142116276Transcription factor MYC2
5gnj_F3e-3142116276Transcription factor MYC2
5gnj_G3e-3142116276Transcription factor MYC2
5gnj_I3e-3142116276Transcription factor MYC2
5gnj_M3e-3142116276Transcription factor MYC2
5gnj_N3e-3142116276Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936878.11e-111LOW QUALITY PROTEIN: transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-66MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A0S3TEN51e-110A0A0S3TEN5_PHAAN; Uncharacterized protein
TrEMBLA0A1S3V9261e-107A0A1S3V926_VIGRR; transcription factor bHLH3
STRINGXP_007144718.11e-107(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-65bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]