PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun010306
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 196aa    MW: 21869.3 Da    PI: 9.1377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-2867PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544e-1755104255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vun010306  55 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 104
                7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-2155113IPR016177DNA-binding domain
PROSITE profilePS5103222.31355112IPR001471AP2/ERF domain
SMARTSM003801.4E-3755118IPR001471AP2/ERF domain
PfamPF008476.6E-1155104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3055113IPR001471AP2/ERF domain
CDDcd000181.66E-2555114No hitNo description
PRINTSPR003673.1E-115667IPR001471AP2/ERF domain
PRINTSPR003673.1E-1194114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
XLSALHFNHT NPRTQGHTRE EKRRERWSLK EEQEERESPT RKRSGVAVAV DGERRYKGIR  60
MRKWGKWVAE IREPNKRSRI WLGSYSTPVA AARAYDTAVF YLRGPSARLN FPDLLVGEGA  120
AALVAGCDMS AASIRKKATE VGARVDALQA SLHHHHVAPP PPELLSRGDG GGSGDFAVDL  180
NKMPEPESED CEWDVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1456112663ATERF1
3gcc_A4e-1456112663ATERF1
5wx9_A7e-14551121472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156777.15e-96hypothetical protein PHAVU_002G016700g
SwissprotQ9SNE16e-52ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLV7CIP21e-94V7CIP2_PHAVU; Uncharacterized protein
STRINGXP_007156777.12e-95(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.15e-50cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]