PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun010472
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 189aa    MW: 19511.7 Da    PI: 8.3765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-1974PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.49.8e-131136227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++++C+++++tG+Ck+G++C+++H+p
  Vun010472 11 DQPECHYYMKTGECKFGPSCRYHHPP 36
               689*********************97 PP
2zf-CCCH32.51.5e-105882327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++C ++ + G Ck+G+ CkF H++
  Vun010472 58 APPCTHYTQRGVCKFGSACKFDHPM 82
               689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.577937IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5936IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-101136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-41535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.695583IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-55582IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-85882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65985IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-56080IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
QKEHPFPERP DQPECHYYMK TGECKFGPSC RYHHPPDKGA PKANVILSPV GLPLRPGAPP  60
CTHYTQRGVC KFGSACKFDH PMGSLSYSPS ASSLADMPVA PYPVGSSIGT LAPSSSSSEL  120
RPELGAGVSK ESVSSRMSSM STSTGSVGLT LSSVGPISQS STQPSAQSSS SSATTSATTT  180
SSTVSHTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510178.11e-89zinc finger CCCH domain-containing protein 34
SwissprotQ5NAV37e-55C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A1S3UVQ73e-88A0A1S3UVQ7_VIGRR; zinc finger CCCH domain-containing protein 34
STRINGXP_007154244.11e-84(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.28e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]