PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun010760
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 178aa    MW: 20634 Da    PI: 9.4636
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45948789PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.6e-2538120186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ qe+++ + +r e+++++ ++k++k+lWe +s +m+e+g++rs++qCk+kw+nl +ryk  +++e++    +++++p++++ +
  Vun010760  38 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISTRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEA---TRQQFPFYNEFN 120
                7********************************************************************96...45679**99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.22E-2337100No hitNo description
PfamPF138373.9E-2038122No hitNo description
PROSITE profilePS500907.2943995IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEGHHLHRHH GQQQQPQQQR LPPQNTSANV DASDRFPQWS IQETKEFLVI RAELDQTFME  60
TKRNKQLWEV ISTRMKEKGY HRSAEQCKCK WKNLVTRYKG FETMEQEATR QQFPFYNEFN  120
AIFTARMQRM LWAEAEGGSK KNKGTQLSSD EEEDGNEESA EAGGGRKKKK AKIAGSGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027906596.11e-131trihelix transcription factor GT-3b-like
SwissprotO804504e-52TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A4D6MUK91e-130A0A4D6MUK9_VIGUN; C2H2-zinc finger protein family
STRINGXP_007133883.11e-104(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-52Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]