PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun010853

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LSD

Protein Properties

Length: 174aa MW: 18373.2 Da PI: 8.5481

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-33491	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43	7.4e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++V+CalC+t+ Vun010853 7 CNGCRSLLLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	49.7	6e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV Vun010853 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	45.4	1.3e-14	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt L+YP+GApsV+Ca+C+ Vun010853 84 CGNCRTALMYPYGAPSVKCAICHY 107 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.0E-13	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.4E-12	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-17	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-13	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.7E-12	81	109	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.5E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT ITSVPPPGME MSQLYCGGCR TLLMYTRGAT 60 SVRCSCCHTV NLVPATNQVA HVHCGNCRTA LMYPYGAPSV KCAICHYITN TNNGRLPIPV 120 HRSNGTANAG TLPSTSTSMP QSQSQTVVVE NPMSVDSSGK LVSNVVAGVT TDKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027915957.1	1e-122	protein LSD1-like
Refseq	XP_027915958.1	1e-122	protein LSD1-like
Swissprot	Q6ASS2	2e-70	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A0L9TDV3	1e-118	A0A0L9TDV3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QYT0	1e-118	A0A0S3QYT0_PHAAN; Uncharacterized protein
STRING	XP_007159613.1	1e-116	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	2e-68	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]