PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011016

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 167aa MW: 18940 Da PI: 9.3718

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-31290	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ l++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vun011016 3 RQRWTPTPVRLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 63 89***************99************************************97 PP
2	Wus_type_Homeobox	99.6	2.4e-32	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp ++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k Vun011016 2 SRQRWTPTPVRLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 64 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.094	1	64	IPR001356	Homeobox domain
SMART	SM00389	7.4E-14	1	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-18	2	65	IPR009057	Homeodomain-like
Pfam	PF00046	6.8E-19	3	63	IPR001356	Homeobox domain
CDD	cd00086	2.81E-13	3	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-16	3	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
ASRQRWTPTP VRLQILERIF DQGNGTPSKE KIKEITAELG QHGQISETNV YNWFQNRRAR 60 SKRKLQNVAP TNTESEVDTE VDSKDKKTKL CFQNPQVYSE LQYLNNDSNK PYSMFPSDAT 120 LKSTRNLSVF NQVLSNSRNE YAGGKMEVGG SVSYNLFHQT GDCNLGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027934740.1	1e-115	WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-38	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A4D6N4M5	1e-114	A0A4D6N4M5_VIGUN; Uncharacterized protein
STRING	XP_007142723.1	1e-106	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-41	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]