PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011199
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 159aa    MW: 18089.8 Da    PI: 8.9475
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45788649PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1181.2e-367158218374
       GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                ++ +s+ +  L++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl ++++  + +  +++E+ +l+++ +++v  ++      +e+  +W+
  Vun011199   7 QAXPSYLPLALRFVKQLMPKIVVTLDRSCDRTDAPFPQHLVFALQSYSGLLESLdAVNV--HPDVLQMIEKYYLQPAMEKLVLGRHGF----QERTLSWK 100
                5566778889********************************************55554..5578899**************987776....68888*** PP

       GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  Vun011199 101 NLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 158
                *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.851138IPR005202Transcription factor GRAS
PfamPF035144.1E-347158IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPIGSSQAXP SYLPLALRFV KQLMPKIVVT LDRSCDRTDA PFPQHLVFAL QSYSGLLESL  60
DAVNVHPDVL QMIEKYYLQP AMEKLVLGRH GFQERTLSWK NLLLSSGFSP LTFSNFTESQ  120
AECLVQRTPG KGFHVEKRQS SLVLCWQRKD LISVSTWRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027928125.11e-106scarecrow-like protein 27
RefseqXP_027928126.11e-106scarecrow-like protein 27
RefseqXP_027928127.11e-106scarecrow-like protein 27
SwissprotO813163e-57SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A4D6NBW91e-105A0A4D6NBW9_VIGUN; DELLA protein
STRINGXP_007140802.11e-103(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-59GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]