PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011217
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 158aa    MW: 17566.7 Da    PI: 6.4306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45822758PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-073477847
                     HHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  8 EdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                     E++ + +a++++  +     +W++Ia+ ++ +++ +++k ++q +
        Vun011217 34 EEKAFENAIAMHWIEeaskeQWEKIASAVP-TKSMEEVKQHYQVL 77
                     89999999999999999999**********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.5E-83484IPR009057Homeodomain-like
CDDcd001672.42E-63478No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
XDFHHSHPPK LNHNCKSNQE PPCHQVEPFG AXVEEKAFEN AIAMHWIEEA SKEQWEKIAS  60
AVPTKSMEEV KQHYQVLVED VSAIEAGHIP FPNYASEETT SSNKDFHASS KATNSDKRSN  120
CNFGTGFSGL GHDSTTHSSG KGALSRSSEQ ERRKGIPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-15341031579RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917818.11e-84transcription factor SRM1-like
TrEMBLA0A4D6KT973e-83A0A4D6KT97_VIGUN; Uncharacterized protein
STRINGXP_007155139.11e-79(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-26MYB family protein