PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011252

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 156aa MW: 17689.6 Da PI: 9.459

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-19855	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.4e-17	32	81	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vun011252 32 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 81 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.64E-21	32	90	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-37	32	95	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.207	32	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-30	33	90	IPR001471	AP2/ERF domain
Pfam	PF00847	5.6E-11	33	81	IPR001471	AP2/ERF domain
CDD	cd00018	3.23E-28	33	91	No hit	No description
PRINTS	PR00367	7.0E-12	33	44	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-12	71	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEEEGLRDCC SSNSTTNRNT KKRKQQHHQD KPYRGIRMRK WGKWVAEIRE PNKRSRIWLG 60 SYSTPVAAAR AYDTAVFYLR GPSARLNFPE LLFQDDDVST QEGNMSADCI RKKATQVGAR 120 VDALQTALQS SSSHSANSSH VSSDKPDLNE YPKPED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-15	29	89	2	63	ATERF1
3gcc_A	1e-15	29	89	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027942214.1	1e-115	ethylene-responsive transcription factor RAP2-1-like
Swissprot	Q8LC30	6e-51	RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
Swissprot	Q9FH94	1e-50	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A4D6NRN8	1e-114	A0A4D6NRN8_VIGUN; EREBP-like factor
STRING	GLYMA04G04355.2	1e-85	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	3e-52	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]