PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011272

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 156aa MW: 15906.3 Da PI: 7.5058

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45876642	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	76.7	6.4e-24	29	115	80	154
DUF702 80 skkqsalsstklssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 sk+ +a+s +++s+a+++k+++ + lP++v+++avfrc rvs++ ge+e+aY ++v+i+GhvfkG+Lyd+G+++ Vun011272 29 SKNVAATSLSSTSNATPSKSFSLDTsscqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADA 115 3333334444444444444433333346666666667***********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.2E-23	17	114	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	9.7E-23	66	112	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
SGANSGSEGN GDGDGDGGAS KRLRTIGSSK NVAATSLSST SNATPSKSFS LDTSSCQQDA 60 GFKQSLPRHV RAPAVFRCHR VSAIGSGEDE IAYLATVHIS GHVFKGFLYD HGADARNDVP 120 SVSELQLGNN GSGKSNNREC SSAIGVPTSA YPASVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027908953.1	1e-107	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-24	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A4D6LB86	1e-106	A0A4D6LB86_VIGUN; Uncharacterized protein
STRING	GLYMA15G37600.1	8e-86	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	7e-23	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]