PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011308
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 154aa    MW: 17775.2 Da    PI: 9.7315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45807482PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-056991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C +Cgk+F  k + ++H +++
  Vun011308 69 FMCRKCGKTFAVKGDWRTHEKNC 91
               89*****************9987 PP
2zf-C2H210.80.001698115522
                TTTEEESSHHHHHHHHHH CS
    zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                 Cg  F++k +Lk Hir+
  Vun011308  98 TCGSDFKHKRSLKDHIRS 115
                799*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-75589No hitNo description
Gene3DG3DSA:3.30.160.603.0E-66589IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.7046989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
GMHMWGHGSE YRKGPDSLKG TQPAAMLRLP CYCCAQGCKN NINRPRAKPL KDFRTLQTHY  60
KRKHGTKPFM CRKCGKTFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH  120
NPHPPFQAFE DEKECITASD EDDANAHHHH HHHA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909145.11e-112zinc finger protein WIP3
SwissprotQ9SGD15e-83ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A4D6LHP21e-110A0A4D6LHP2_VIGUN; Uncharacterized protein
STRINGGLYMA12G09400.11e-104(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-85WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]