PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011324

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 153aa MW: 17101 Da PI: 4.8413

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45837365	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	39.1	1.8e-12	7	100	6	94
NF-YB 6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k l +++ +skd e fi ++++ a+d c++ kr+ +n++d++ al + f +++ plk+ l+++r+ + Vun011324 7 DELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVNAEDVFKALEETEFSEFIRPLKASLEEFRKKN 100 5688888999999888622234541156788888899999***************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.8E-30	7	137	IPR009072	Histone-fold
Pfam	PF00808	1.6E-7	8	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.55E-22	9	125	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
NRMAEADELP RSIVRRVVKD KLSRCSEEGE ISVSKDGLLA FSESGRIFIH YLSATANDIC 60 KESKRQIVNA EDVFKALEET EFSEFIRPLK ASLEEFRKKN VGKKAAVGKG KEEEQRKKRK 120 LEAESSDKGE ASINDESSDK AEGSDKGEGE DDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	2e-12	9	126	18	130	DNA polymerase epsilon subunit D
5y27_A	2e-12	9	126	18	130	DNA polymerase epsilon subunit D
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	118	RKKNVGKKAAVGKGKEEEQRKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027909701.1	1e-101	DNA polymerase epsilon subunit 3 isoform X2
TrEMBL	A0A4D6LHN3	1e-100	A0A4D6LHN3_VIGUN; DNA polymerase epsilon subunit 3
STRING	XP_007132441.1	6e-93	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-40	nuclear factor Y, subunit B11