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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Vun011548 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 140aa MW: 16274.6 Da PI: 5.3219 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 42.8 | 1.4e-13 | 2 | 72 | 14 | 84 |
trihelix 14 rremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
r eme+r+ + g++++ Wee++ km+ g+ers+ kekwe+ +++ ++ k+g+kkr +e+s+ c yfd+
Vun011548 2 RAEMETRYMQsGCSEEFMWEEIATKMACFGYERSALVFKEKWESTRNYARNAKDGNKKR-KEDSRGCFYFDN 72
678898877538**********************************************8.88999*****86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 2.4E-7 | 5 | 72 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 140 aa Download sequence Send to blast |
XRAEMETRYM QSGCSEEFMW EEIATKMACF GYERSALVFK EKWESTRNYA RNAKDGNKKR 60 KEDSRGCFYF DNSEQSSLYN QGGTYCDIND QRHERRLQND GSSPSNSNVA GDNCFPFLMT 120 EGANLWENYS LKVNKASQNQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027931315.1 | 7e-98 | trihelix transcription factor PTL | ||||
| TrEMBL | A0A4D6MDA1 | 2e-96 | A0A4D6MDA1_VIGUN; Uncharacterized protein | ||||
| STRING | XP_007162858.1 | 2e-89 | (Phaseolus vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G03680.1 | 3e-24 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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