PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011558

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 140aa MW: 15704.4 Da PI: 8.2054

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45865218	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.8	4e-30	42	127	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e++aL+++r++m+ ++r+++ k+plW++vskk++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+ s+t+++f+qlea Vun011558 42 RWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAEAGYNRSAKKCKEKFENIYKYHRRTKEGRCGK-SNGSKTYRFFEQLEA 127 8******************************************************************86.78889******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.573	35	99	IPR017877	Myb-like domain
SMART	SM00717	1.9E-4	39	101	IPR001005	SANT/Myb domain
CDD	cd12203	2.31E-24	41	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-4	41	100	IPR009057	Homeodomain-like
Pfam	PF13837	4.6E-20	41	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MLEVYTSPET PLENPEGGAA AVSEGMKAED GEGGDRNSAA SRWPKEETMA LLKIRSDMDV 60 AFRDTNPKAP LWDQVSKKLA EAGYNRSAKK CKEKFENIYK YHRRTKEGRC GKSNGSKTYR 120 FFEQLEALEG HHSLLTPSVX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027903988.1	5e-97	trihelix transcription factor GTL1-like
Swissprot	Q39117	6e-40	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A4D6NU26	1e-95	A0A4D6NU26_VIGUN; Uncharacterized protein
STRING	XP_007137690.1	2e-80	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-45	Trihelix family protein