PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011572
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 139aa    MW: 16103.4 Da    PI: 10.1642
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-29963PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-192683457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vun011572 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
               6789****************************************************97 PP
2bZIP_123.61.1e-07771221863
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l  e+
  Vun011572  77 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVVEN 122
                9****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1432084IPR001356Homeobox domain
SMARTSM003893.1E-152288IPR001356Homeobox domain
CDDcd000863.95E-132585No hitNo description
SuperFamilySSF466891.03E-172588IPR009057Homeodomain-like
PfamPF000463.9E-172683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-192780IPR009057Homeodomain-like
Gene3DG3DSA:1.20.5.1707.4E-481130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAMAVAQHRE SSSSGSIDKH LDAGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVV  120
ENGYMRQQLH TTSAATTDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132262.12e-91hypothetical protein PHAVU_011G079800g
RefseqXP_014494018.12e-91homeobox-leucine zipper protein REVOLUTA
RefseqXP_027910340.12e-91homeobox-leucine zipper protein REVOLUTA
SwissprotA2XK304e-73HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST14e-73HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S3TJR95e-90A0A1S3TJR9_VIGRR; homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A4D6LHS84e-90A0A4D6LHS8_VIGUN; Homeobox-leucine zipper protein
TrEMBLR9R6717e-91R9R671_9FABA; Homeobox-leucine zipper protein REVOLUTA-like isoform 2 (Fragment)
TrEMBLV7AJI75e-90V7AJI7_PHAVU; Uncharacterized protein
STRINGXP_007132262.18e-91(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.18e-74HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]