PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun011631

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 135aa MW: 15098.1 Da PI: 10.8297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-1535359	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vun011631 84 FICEVCNKGFQREQNLQLHRRGH 106 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.35E-5	82	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.1E-7	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	4.1E-6	84	106	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	84	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MASGSSSTPF LGIRQQNQTQ VSQHHQPSTA ASSTTTTTTT TTSTTTTTPT TVPQKKRRNQ 60 PGTPYPDAEV IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSNKEP 120 KRKVYLCPEP TCVHH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914230.1	1e-91	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_027914231.1	1e-91	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	2e-51	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A0S3T0P3	2e-69	A0A0S3T0P3_PHAAN; Uncharacterized protein
TrEMBL	A0A151RGC0	1e-69	A0A151RGC0_CAJCA; Zinc finger protein NUTCRACKER
STRING	XP_007153117.1	4e-68	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	9e-52	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]