PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011674
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 132aa    MW: 14334.1 Da    PI: 7.0254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-15581PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34.1e-112853126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C++++ +G Ck+G++CkF H+
  Vun011674 28 PGQAVCSYYRIYGMCKFGPTCKFDHP 53
               57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.474112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-62553IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5442755IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-62754IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-82953IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-43252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDPDCKFHHP KERISQSLIN PLGLPVRPGQ AVCSYYRIYG MCKFGPTCKF DHPVLTIPQN  60
YGLTSPALAL DAPLISNQRG LSSVQPPETS PSKLSSDNKL QHSDAKAATE DSSKQADTTP  120
NSFPASSEPL HD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940708.15e-87LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A0L9UVL63e-86A0A0L9UVL6_PHAAN; Uncharacterized protein
TrEMBLA0A4D6MIZ31e-85A0A4D6MIZ3_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGXP_007141660.17e-83(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-21C3H family protein