PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011806
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 123aa    MW: 13896.2 Da    PI: 4.3536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-5607PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-082773246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g WT+eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
        Vun011806 27 GGWTAEENKLFENALAYYDKDtpdRWMRVAAMIP-GKTVGDVIQQYRE 73
                     56********************************.*******999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1332175IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-42274IPR009057Homeodomain-like
SMARTSM007171.7E-72577IPR001005SANT/Myb domain
PfamPF002498.2E-72773IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-122782IPR009057Homeodomain-like
CDDcd001671.62E-62974No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MNRAIEVLSP ASYLQNSNWL FQESKGGGWT AEENKLFENA LAYYDKDTPD RWMRVAAMIP  60
GKTVGDVIQQ YRELEEDVSV IEAGLIPVPG YTTSSFTLEW VNSQSYDEFK HFCAVGEKRG  120
ASX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-192699881RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027928847.13e-86transcription factor DIVARICATA
SwissprotQ8S9H77e-39DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D6NG596e-85A0A4D6NG59_VIGUN; DnaJ-like protein subfamily C member 2
STRINGXP_007140381.12e-81(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-59MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]