PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun012012
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 102aa    MW: 11896.5 Da    PI: 9.505
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45840005PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.84.9e-253102269373
       GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                dsl+a    + +  +k+Er++++++i++++   + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+
  Vun012012   3 DSLDAV-NVNLDVLQKIERHFIQPAIKKIILGHHHS----QEKLPPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELI 97 
                566433.23447789****************99998....9*********************************************************** PP

       GRAS 369 svSaW 373
                svS W
  Vun012012  98 SVSTW 102
                ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.39183IPR005202Transcription factor GRAS
PfamPF035141.7E-223102IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
XWDSLDAVNV NLDVLQKIER HFIQPAIKKI ILGHHHSQEK LPPWRNLFLQ SGFSPFTFSN  60
FTEAQAECLV QRAPVRGFHV ERKPSSLVLC WQRKELISVS TW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522977.12e-64scarecrow-like protein 6
RefseqXP_017442411.12e-64PREDICTED: scarecrow-like protein 6
RefseqXP_017442412.12e-64PREDICTED: scarecrow-like protein 6
RefseqXP_027907533.12e-64scarecrow-like protein 6
SwissprotO813162e-37SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9VRF45e-63A0A0L9VRF4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SXY65e-63A0A0S3SXY6_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VXQ05e-63A0A1S3VXQ0_VIGRR; scarecrow-like protein 6
TrEMBLA0A4D6MNU85e-63A0A4D6MNU8_VIGUN; DELLA protein
STRINGGLYMA01G33270.17e-62(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-40GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]