PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun012130
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 80aa    MW: 9310.67 Da    PI: 8.9116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45822839PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-15779PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT++E++ l+ +v+++G+g Wk I + 
        Vun012130  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKD 34
                     79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.686153IPR017930Myb domain
SuperFamilySSF466891.96E-11268IPR009057Homeodomain-like
PfamPF002491.3E-8533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-11536IPR009057Homeodomain-like
CDDcd116601.93E-12650No hitNo description
Gene3DG3DSA:2.60.120.109.3E-75079IPR014710RmlC-like jelly roll fold
PfamPF058993.6E-75078IPR008579Domain of unknown function DUF861, cupin-3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSHSNIDLK MGMPQGKFPW  60
SYEEKETYYL VEGKVKVWVK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583000.19e-29telomere repeat-binding factor 4 isoform X2
RefseqXP_020986124.13e-29telomere repeat-binding factor 4-like
RefseqXP_020986125.13e-29telomere repeat-binding factor 4-like
RefseqXP_020986126.13e-29telomere repeat-binding factor 4-like
RefseqXP_020986127.13e-29telomere repeat-binding factor 4-like
RefseqXP_028238774.19e-29telomere repeat-binding factor 4-like isoform X2
SwissprotF4I7L11e-19TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A4D6NBT55e-41A0A4D6NBT5_VIGUN; Myb proto-oncogene protein
STRINGGLYMA07G00930.16e-28(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-22MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]